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This is a list of computer software which is made for bioinformatics and released under open-source software licenses with articles in Wikipedia.
GitHub Copilot. GitHub Copilot is a code completion tool developed by GitHub and OpenAI that assists users of Visual Studio Code, Visual Studio, Neovim, and JetBrains integrated development environments (IDEs) by autocompleting code. [1] Currently available by subscription to individual developers and to businesses, the generative artificial ...
OpenAI Codex is an artificial intelligence model developed by OpenAI. It parses natural language and generates code in response. It powers GitHub Copilot, a programming autocompletion tool for select IDEs, like Visual Studio Code and Neovim. [1] Codex is a descendant of OpenAI's GPT-3 model, fine-tuned for use in programming applications.
The Biopython project is an open-source collection of non-commercial Python tools for computational biology and bioinformatics, created by an international association of developers. [1] [4] [5] It contains classes to represent biological sequences and sequence annotations, and it is able to read and write to a variety of file formats. It also allows for a programmatic means of accessing ...
Bio-inspired computing, short for biologically inspired computing, is a field of study which seeks to solve computer science problems using models of biology. It relates to connectionism, social behavior, and emergence. Within computer science, bio-inspired computing relates to artificial intelligence and machine learning.
Machine learning in bioinformatics is the application of machine learning algorithms to bioinformatics, [1] including genomics, proteomics, microarrays, systems biology, evolution, and text mining. [2] [3] Prior to the emergence of machine learning, bioinformatics algorithms had to be programmed by hand; for problems such as protein structure ...
R is widely used in new-style artificial intelligence, involving statistical computations, numerical analysis, the use of Bayesian inference, neural networks and in general machine learning. In domains like finance, biology, sociology or medicine it is considered one of the main standard languages. It offers several paradigms of programming like vectorial computation, functional programming ...
U-Net is a convolutional neural network that was developed for biomedical image segmentation at the Computer Science Department of the University of Freiburg. [1] The network is based on a fully convolutional neural network [2] whose architecture was modified and extended to work with fewer training images and to yield more precise segmentation.