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The geometric-distance matrix of a molecular structure G is a real symmetric n x n matrix defined in the same way as a 2-D matrix. However, the matrix elements D ij will hold a collection of shortest Cartesian distances between i and j in G. Also known as topographic matrix, the geometric-distance matrix can be constructed from the known ...
Euclidean distance matrix. In mathematics, a Euclidean distance matrix is an n×n matrix representing the spacing of a set of n points in Euclidean space . For points in k -dimensional space ℝk, the elements of their Euclidean distance matrix A are given by squares of distances between them. That is. where denotes the Euclidean norm on ℝk .
In Euclidean geometry, a translation is a geometric transformation that moves every point of a figure, shape or space by the same distance in a given direction. A translation can also be interpreted as the addition of a constant vector to every point, or as shifting the origin of the coordinate system. In a Euclidean space, any translation is ...
Distance geometry is the branch of mathematics concerned with characterizing and studying sets of points based only on given values of the distances between pairs of points. [1] [2] [3] More abstractly, it is the study of semimetric spaces and the isometric transformations between them. In this view, it can be considered as a subject within ...
In mathematics, an isometry (or congruence, or congruent transformation) is a distance -preserving transformation between metric spaces, usually assumed to be bijective. [ a] The word isometry is derived from the Ancient Greek: ἴσος isos meaning "equal", and μέτρον metron meaning "measure". If the transformation is from a metric ...
Euclidean distance. In mathematics, the Euclidean distance between two points in Euclidean space is the length of the line segment between them. It can be calculated from the Cartesian coordinates of the points using the Pythagorean theorem, and therefore is occasionally called the Pythagorean distance . These names come from the ancient Greek ...
Dot product. In mathematics, the dot product or scalar product[ note 1] is an algebraic operation that takes two equal-length sequences of numbers (usually coordinate vectors ), and returns a single number. In Euclidean geometry, the dot product of the Cartesian coordinates of two vectors is widely used. It is often called the inner product (or ...
Definition. Formally, a metric space is an ordered pair (M, d) where M is a set and d is a metric on M, i.e., a function satisfying the following axioms for all points : [4] [5] The distance from a point to itself is zero: (Positivity) The distance between two distinct points is always positive: